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云之南

风声,雨声,读书声,声声入耳;家事,国事,天下事,事事关心

 
 
 

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专业背景:计算机科学 研究方向与兴趣: JavaEE-Web软件开发, 生物信息学, 数据挖掘与机器学习, 智能信息系统 目前工作: 基因组, 转录组, NGS高通量数据分析, 生物数据挖掘, 植物系统发育和比较进化基因组学

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已发表的文章  

2013-06-15 22:10:38|  分类: 生物信息学 |  标签: |举报 |字号 订阅

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已发表的小文章,欢迎大家引用,批评,指正!
2016:
Development of a universal and simplified ddRAD library preparation approach for SNP discovery and genotyping in angiosperm plants. (plant methods, IF 3.449)
Guo-Qian Yang, Yun-Mei Chen, Jin-Peng Wang, Cen Guo, Lei Zhao, Xiao-Yan Wang, Ying Guo, Li Li, De-Zhu Li§ and Zhen-Hua Guo§
http://plantmethods.biomedcentral.com/articles/10.1186/s13007-016-0139-1

Phylogenomic Analyses of Large-scale NuclearGenes Provide New Insights into the Evolutionary Relationshipswithin the Rosids. (Molecular Phylogenetics and Evolution, IF 3.9)
Lei Zhao, Xia Li, Ning Zhang, Shu-Dong Zhang, Ting-Shuang Yi, Hong Ma, Zhen-Hua Guo§, De-Zhu Li§
http://www.sciencedirect.com/science/article/pii/S1055790316301452

2014:

Investigating the MicroRNAomes of Two Developmental Phases of Dendrocalamus latiflorus (Poaceae: Bambusoideae) Inflorescences (Plant Mol Biol Rep)
Xu-Yao Zhao Xiao-Yan Wang  Lei Zhao Xue-Mei Zhang Si-Yun Chen  Peng-Fei Ma  Xiang-Yang Hu De-Zhu Li
§ Zhen-Hua Guo§

http://link.springer.com/article/10.1007/s11105-014-0808-z
Identification of Putative Orthologous Genes for the Phylogenetic Reconstruction of Temperate Woody Bamboos (Poaceae: Bambusoideae)
Molecular Ecology Resources (IF: 7.432)
http://onlinelibrary.wiley.com/doi/10.1111/1755-0998.12248/abstract
Li-Na Zhang, Xian-Zhi Zhang ,Yu-Xiao Zhang, Chun-Xia Zeng, Peng-Fei Ma, Lei Zhao, Zhen-Hua Guo, De-Zhu Li§
2013:

Identification of SNP markers for inferring phylogeny in temperate bamboos (Poaceae: Bambusoideae) using RAD sequencing. Molecular Ecology Resources,13(5),938–945. (co-first author, IF: 7.432)
X. Q. WANG,*  L. ZHAO,* D. A. R. EATON,? D. Z. LI§ and Z. H. GUO
§  
http://onlinelibrary.wiley.com/doi/10.1111/1755-0998.12136/abstract

Lei Zhao, Ning Zhang, Peng-Fei Ma, Qi Liu, De-Zhu Li
§, Zhen-Hua Guo§ (2013). Phylogenomic Analyses of Nuclear Genes Reveal the Evolutionary Relationships within the BEP Clade and the Evidence of Positive Selection in Poaceae. PLoS ONE 8(5): e64642. (IF: 4.092)
  http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0064642

Ye-peng Sun, Fa-wei Wang, Nan Wang, Yuan-yuan Dong, Qi Liu, Lei Zhao, Huan Chen, Wei-can Liu, Hai-long Yin, Xiao-mei Zhang, Yan-xi Yuan, Hai-yan Li (2013). Transcriptome Exploration in Leymus chinensis under Saline-Alkaline Treatment Using 454 Pyrosequencing. PLoS One 8: e53632. (IF: 4.092)
http://www.plosone.org/article/info:doi/10.1371/journal.pone.0053632


2012:

Xue-Mei Zhang, Lei Zhao,*   Zachary Larson-Rabin,*   De-Zhu Li, Zhen-Hua Guo§ (2012). De Novo Sequencing and Characterization of the Floral Transcriptome of Dendrocalamus latiflorus (Poaceae: Bambusoideae). PLoS One 7: e42082. (co-first author, IF: 4.092)

http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0042082


ZHAO Lei, Zachary LARSON RABIN, CHEN Si Yun, GUO Zhen Hua (2012). Comparing De Novo Transcriptome Assemblers Using Illumina SOLEXA RNA-Seq Reads. Plant Divers Resour 34 (5): 487-501.

基于Illumina RNA-Seq短序列的转录组从头组装软件比较与优化(英文)

http://journal.kib.ac.cn/CN/article/downloadArticleFile.do?attachType=PDF&id=3092


2011:

China Plant BOL Group, De-Zhu Li§ , Lian-Ming Gao, Hong-Tao Li, Hong Wang, Xue-Jun Ge, Jian-Quan Liu, Zhi-Duan Chen, Shi-Liang Zhou, Shi-Lin Chen, Jun-Bo Yang, Cheng-Xin Fu, Chun-Xia Zeng, Hai-Fei Yan, Ying-Jie Zhu, Yong-Shuai Sun, Si-Yun Chen, Lei Zhao, Kun Wang, Tuo Yang, and Guang-Wen Duan (2011). Comparative analysis of a large dataset indicates that internal transcribed spacer (ITS) should be incorporated into the core barcode for seed plants. Proc Natl Acad Sci U S A 108: 19641-19646. (IF: 9.68)

http://www.pnas.org/content/early/2011/11/17/1104551108



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