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专业背景：计算机科学研究方向与兴趣: JavaEE-Web软件开发, 生物信息学, 数据挖掘与机器学习, 智能信息系统目前工作: 基因组, 转录组, NGS高通量数据分析, 生物数据挖掘, 植物系统发育和比较进化基因组学

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plant miRNA Database

2011-07-01 14:22:40| 分类： noncodingRNA | 标签： |举报 |字号大中小订阅

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miRU: Plant miRNA Potential Target Finder
http://bioinfo3.noble.org/miRNA/miRU.htm

This website allows users to predict plant miRNA target genes. By entering a small RNA sequence (19-28nt) the program will report all potential complimentary sequences.

PlantGDB
http://www.plantgdb.org/

This website is dedicated entirely to plant miRNA and provides many useful tools such as sequence browser & assemblies, genome browser, and other tools and datasets.

PMRD: plant miRNA Database
http://bioinformatics.cau.edu.cn/PMRD/

This site offers a complete list of all publicly known plant miRNA sequences. The database is composed of a total of 8,433 sequences including all known sequences in the miRBase database.

UPC: A Resource for Predicting and Comparing Plant microRNAs
http://www3a.biotec.or.th/micropc/index.html

Here users can predict and compare plant miRNA sequences. This site includes 128 miRNA families, 125 plant species, and 2,995 protein targets.

The UEA plant sRNA toolkit
http://srna-tools.cmp.uea.ac.uk/targets/

Users can input sequences up to 50 nucleotides in length in FASTA format to run target predictions for their sequence dataset.

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