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FASTA sequence ID format values

2011-05-29 11:28:47| 分类：生信数据库 | 标签： |举报 |字号大中小订阅

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http://www.ncbi.nlm.nih.gov/books/NBK7183/table/ch_demo.T5/?report=objectonly

Table 5. FASTA sequence ID format values

Type	Format(s) 1	Example(s)
local	lcl\|integer lcl\|string	lcl\|123 lcl\|hmm271
GenInfo backbone seqid	bbs\|integer	bbs\|123
GenInfo backbone moltype	bbm\|integer	bbm\|123
GenInfo import ID	gim\|integer	gim\|123
GenBank	gb\|accession\|locus	gb\|M73307\|AGMA13GT
EMBL	emb\|accession\|locus	emb\|CAM43271.1\|
PIR	pir\|accession\|name	pir\|\|G36364
SWISS-PROT	sp\|accession\|name	sp\|P01013\|OVAX_CHICK
patent	pat\|country\|patent\|sequence	pat\|US\|RE33188\|1
pre-grant patent	pgp\|country\|application-number\|seq-number	pgp\|EP\|0238993\|7
RefSeq 2	ref\|accession\|name	ref\|NM_010450.1\|
general database reference	gnl\|database\|integer gnl\|database\|string	gnl\|taxon\|9606 gnl\|PID\|e1632
GenInfo integrated database	gi\|integer	gi\|21434723
DDBJ	dbj\|accession\|locus	dbj\|BAC85684.1\|
PRF	prf\|accession\|name	prf\|\|0806162C
PDB	pdb\|entry\|chain	pdb\|1I4L\|D
third-party GenBank	tpg\|accession\|name	tpg\|BK003456\|
third-party EMBL	tpe\|accession\|name	tpe\|BN000123\|
third-party DDBJ	tpd\|accession\|name	tpd\|FAA00017\|
TrEMBL	tr\|accession\|name	tr\|Q90RT2\|Q90RT2_9HIV1
genome pipeline 3	gpp\|accession\|name	gpp\|GPC_123456789\|
named annotation track 3	nat\|accession\|name	nat\|AT_123456789.1\|

: 1 Spaces should not be present in ID's. It's okay to leave off the final vertical bar for most text ID types (such as gb) when the locus is absent; apart from that, vertical bars must be present even if an adjacent field is omitted.
: 2 Some RefSeq accessions have additional letters following the underscore. See the RefSeq accession format reference for details.

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Type	Format(s) 1	Example(s)
local	lcl\|integer lcl\|string	lcl\|123 lcl\|hmm271
GenInfo backbone seqid	bbs\|integer	bbs\|123
GenInfo backbone moltype	bbm\|integer	bbm\|123
GenInfo import ID	gim\|integer	gim\|123
GenBank	gb\|accession\|locus	gb\|M73307\|AGMA13GT
EMBL	emb\|accession\|locus	emb\|CAM43271.1\|
PIR	pir\|accession\|name	pir\|\|G36364
SWISS-PROT	sp\|accession\|name	sp\|P01013\|OVAX_CHICK
patent	pat\|country\|patent\|sequence	pat\|US\|RE33188\|1
pre-grant patent	pgp\|country\|application-number\|seq-number	pgp\|EP\|0238993\|7
RefSeq 2	ref\|accession\|name	ref\|NM_010450.1\|
general database reference	gnl\|database\|integer gnl\|database\|string	gnl\|taxon\|9606 gnl\|PID\|e1632
GenInfo integrated database	gi\|integer	gi\|21434723
DDBJ	dbj\|accession\|locus	dbj\|BAC85684.1\|
PRF	prf\|accession\|name	prf\|\|0806162C
PDB	pdb\|entry\|chain	pdb\|1I4L\|D
third-party GenBank	tpg\|accession\|name	tpg\|BK003456\|
third-party EMBL	tpe\|accession\|name	tpe\|BN000123\|
third-party DDBJ	tpd\|accession\|name	tpd\|FAA00017\|
TrEMBL	tr\|accession\|name	tr\|Q90RT2\|Q90RT2_9HIV1
genome pipeline 3	gpp\|accession\|name	gpp\|GPC_123456789\|
named annotation track 3	nat\|accession\|name	nat\|AT_123456789.1\|

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