http://www.ncbi.nlm.nih.gov/books/NBK7183/table/ch_demo.T5/?report=objectonly
Table 5. FASTA sequence ID format values
Type | Format(s) 1 | Example(s) |
---|---|---|
local | lcl|integer lcl|string | lcl|123 lcl|hmm271 |
GenInfo backbone seqid | bbs|integer | bbs|123 |
GenInfo backbone moltype | bbm|integer | bbm|123 |
GenInfo import ID | gim|integer | gim|123 |
GenBank | gb|accession|locus | gb|M73307|AGMA13GT |
EMBL | emb|accession|locus | emb|CAM43271.1| |
PIR | pir|accession|name | pir||G36364 |
SWISS-PROT | sp|accession|name | sp|P01013|OVAX_CHICK |
patent | pat|country|patent|sequence | pat|US|RE33188|1 |
pre-grant patent | pgp|country|application-number|seq-number | pgp|EP|0238993|7 |
RefSeq 2 | ref|accession|name | ref|NM_010450.1| |
general database reference | gnl|database|integer gnl|database|string | gnl|taxon|9606 gnl|PID|e1632 |
GenInfo integrated database | gi|integer | gi|21434723 |
DDBJ | dbj|accession|locus | dbj|BAC85684.1| |
PRF | prf|accession|name | prf||0806162C |
PDB | pdb|entry|chain | pdb|1I4L|D |
third-party GenBank | tpg|accession|name | tpg|BK003456| |
third-party EMBL | tpe|accession|name | tpe|BN000123| |
third-party DDBJ | tpd|accession|name | tpd|FAA00017| |
TrEMBL | tr|accession|name | tr|Q90RT2|Q90RT2_9HIV1 |
genome pipeline 3 | gpp|accession|name | gpp|GPC_123456789| |
named annotation track 3 | nat|accession|name | nat|AT_123456789.1| |
1 Spaces should not be present in ID's. It's okay to leave off the final vertical bar for most text ID types (such as gb) when the locus is absent; apart from that, vertical bars must be present even if an adjacent field is omitted.
2 Some RefSeq accessions have additional letters following the underscore. See the RefSeq accession format reference for details.
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