专业背景：计算机科学 研究方向与兴趣: JavaEE-Web软件开发, 生物信息学, 数据挖掘与机器学习, 智能信息系统 目前工作: 基因组, 转录组, NGS高通量数据分析, 生物数据挖掘, 植物系统发育和比较进化基因组学
import java.io.BufferedReader;
import java.io.FileNotFoundException;
import java.io.FileReader;
import java.io.IOException;
import java.util.Scanner;
import java.util.regex.*;
/**
*
*/
/**
* @author Administrator
*
*/
public class Test {
/**
*
*/
public Test() {
// TODO Auto-generated constructor stub
}
/**
* @param args
* @throws IOException
*/
public static void main(String[] args) throws IOException {
// TODO Auto-generated method stub
Scanner stdin = new Scanner(System.in);
System.out.println("请输入包含所有基因家族blast文件的文件名,如：/path/file:");
String geneFamily_blast_all= stdin.nextLine();
FileReader geneFamily_blast_freader = null;
BufferedReader geneFamily_blast_breader = null;
try {
geneFamily_blast_freader = new FileReader(geneFamily_blast_all);
geneFamily_blast_breader = new BufferedReader(geneFamily_blast_freader);
} catch (FileNotFoundException e) {
// TODO Auto-generated catch block
e.printStackTrace();
System.out.println("geneFamily_blast_all File Not Found!");
}
String geneFamily_blast_filepath="";
String chromo_all_filepath="";
/*输入路径是这种情况：D:\statistic\rice_genomices\chromosome01.fasta
* 模式用下面的
* Pattern pattern = Pattern.compile("[\\\\.]");
* 如果 路径是这样的，D:/statistic/rice_genomices/chromosome01.fasta
* 则用Pattern pattern = Pattern.compile("[/\\.]");
*/
Pattern pattern = Pattern.compile("[/\\.]");
while((geneFamily_blast_filepath=geneFamily_blast_breader.readLine())!=null){
String[] strs = pattern.split(geneFamily_blast_filepath);
for (int i=0;i<strs.length;i++) {
System.out.println(strs[i]); }
}
}
}
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