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云之南

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专业背景:计算机科学 研究方向与兴趣: JavaEE-Web软件开发, 生物信息学, 数据挖掘与机器学习, 智能信息系统 目前工作: 基因组, 转录组, NGS高通量数据分析, 生物数据挖掘, 植物系统发育和比较进化基因组学

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拟南芥 arabidopsis.org-Other Genomes  

2010-04-04 14:13:50|  分类: 生信数据库 |  标签: |举报 |字号 订阅

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http://www.arabidopsis.org/portals/genAnnotation/other_genomes/index.jsp

Home > Portals > Genome Annotation > Other Genomes

plant-specific and non-plant model organism databases, as well as links to other sites that maintain links to numerous organism-specific resources.

This page also has links to information about other plant genome sequencing projectsBeanGenes - beans

Phaseolus and Vigna species

The Brachypodium distachyon Information Resource - model grass

Brachypodium distachyon

Chlamydomonas Center - green alga

Chlamydomonas

ForesttreeDB - white spruce, loblolly pine, and poplar

Picea glauca, Pinus taeda, and Populus species

GrainGenes - grasses

Triticum and Avena species

Gramene - cultivated rice, wild rice, maize, wheat, barley, sorghum, pearl millet, foxtail, and oats

Oryza sativa and Zizania species, Zea mays, Triticum aestivum, Hordeum vulgare, Sorghum bicolor, Pennisetum glaucum, Alopecurus pratensis, Avena species, and other grasses

Legume Base - Lotus japonicus and soybean

Lotus japonicus and Glycine max

The Legume Information Service - multiple legumes

Cicer arietinum, Glycine max, Lotus japonicus, Medicago truncatula, Phaseolus vulgaris, Vigna radiata and other legumes

Maize GDB - corn / maize

Zea mays

Maize Mapping Project - corn / maize

Zea mays

Medicago.org - barrel medic

Medicago truncatula

MIPS (Munich Information Center for Protein Sequence) - mouse ear cress, corn / maize, rice, barrel medic, Lotus japonicus, tomato

Arabidopsis thaliana, Zea mays, Oryza sativa, Medicago truncatula, Lotus japonicus, Solanum lycopersicum

Oryzabase - rice species

Oryza species

Poplar Genome - poplar

Populus trichocarpa

Rice Genome Research Project - cultivated rice

Oryza sativa

SGN (Sol Genomics Network) - tomato, potato, eggplant, pepper, petunia, coffee, petunia

Solanaceae and Rubiaceae species

Systematics and phylogeny of the mustard family Brassicaceae (Cruciferae)

SoyBase - soybean

Glycine max

TIGR Plant Genomics Database - multiple species

UrMeLDB - barrel medic

Medicago truncatula

Wheat Genetic and Genomic Resources Center - wheat and related grasses

Triticum, Aegilops, and Haynaldia villosa species

CyanoBase - Cyanobacteria

Cyanobacteria species

Dictybase - Dictyostelium

Dictyostelium discoideum

FlyBase - fruit fly

Drosophila species

MGI (Mouse Genome Informatics) - mouse

Mus musculus

OMIM (Online Mendelian Inheritance in Man) - human

Homo sapiens

RGD (Rat Genome Database) - rat

Rattus norvegicus

S. pombe Genome Project - fission yeast

Schizosaccharomyces pombe

SGD (Saccharomyces Genome Database) - budding yeast / baker's yeast

Saccharomyces cerevisiae

WormBase - round worms

Caenorhabditis species

ZFIN - zebrafish

Danio rerio

JGI Eukaryotic Genomics Projects - over 40 species

JGI Microbial Genomics Projects - over 200 species

Multiple Species Genome Browser - numerous non-plant species

NCBI Entrez Genome Project Database - hundreds of species

TIGR Genome Projects - multiple species

Worldwide Genetic Resources - over 750 species

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NCBI Entrez Genome Project Database.

Quick Status Summary

Common name Latin name Status Sequencing group Sequencing method
DICOTS
mouse ear cress Arabidopsis thaliana completed consortium (AGI) clone
poplar Populus trichocarpa completed JGI whole genome shotgun
lyreleaf rockcress Arabidopsis lyrata in progress JGI whole genome shotgun
pink shepherd's purse Capsella rubella in progress JGI whole genome shotgun
rapeseed Brassica rapa in progress consortium (MGBP) clone
tomato Lycopersicum esculentum in progress consortium (ITGSP) clone
potato Solanum tuberosum in progress consortium (PGSC) clone
barrel medic Medicago truncatula completed? consortium (IMGAG) clone
  Lotus japonicus in progress consortium clone
monkey flower Mimulus guttatus in progress JGI whole genome shotgun
soybean Glycine max in progress JGI whole genome shotgun
cotton Gossypium hirsutum in progress JGI whole genome shotgun
cassava Manihot esculenta in progress JGI whole genome shotgun
grape Vitis vinifera completed? consortium whole genome shotgun
columbine Aquilegia formosa pending JGI whole genome shotgun
eucalyptus Eucalyptus grandis pending JGI whole genome shotgun
papaya Carica papaya in progress? consortium whole genome shotgun
castor bean Ricinus communis completed? TIGR whole genome shotgun
yellow owl's clover Triphysaria versicolor pending JGI whole genome shotgun
MONOCOTS
rice Oryza sativa japonica Nipponbare completed consortium (IRGSP) clone shotgun
rice Oryza sativa indica completed Beijing Genomics Institute whole genome shotgun
maize Zea mays in progress consortium clone
sorghum Sorghum bicolor completed JGI whole genome shotgun
grass Brachypodium distachyon in progress JGI whole genome shotgun
foxtail millet Setaria italica pending JGI whole genome shotgun
banana Musa acuminata in progress consortium clone
wheat Triticum aestivum pilot consortium (IWGSC) clone or single chromosome shotgun
OTHER
moss Physcomitrella patens completed JGI whole genome shotgun
gemmiferous spike moss Selaginella moellendorffii completed JGI whole genome shotgun

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