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专业背景：计算机科学研究方向与兴趣: JavaEE-Web软件开发, 生物信息学, 数据挖掘与机器学习, 智能信息系统目前工作: 基因组, 转录组, NGS高通量数据分析, 生物数据挖掘, 植物系统发育和比较进化基因组学

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拟南芥 arabidopsis.org-Other Genomes

2010-04-04 14:13:50| 分类：生信数据库 | 标签： |举报 |字号大中小订阅

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http://www.arabidopsis.org/portals/genAnnotation/other_genomes/index.jsp

Home > Portals > Genome Annotation > Other Genomes

Genome Snapshot
Gene Structural Annotation
Gene Functional Annotation
- Ontologies
- TAIR Gene Search
- Search/Browse TAIR Keywords
- TAIR GO Annotation Download
- TAIR and the GO Reference Genome Project
- Search/Browse Gene Ontology Database
- Search/Browse Plant Ontology Database
- Submit Functional Annotation to TAIR
- FTP Downloads
Genome Annotation Tools
Other Genomes

plant-specific and non-plant model organism databases, as well as links to other sites that maintain links to numerous organism-specific resources.

This page also has links to information about other plant genome sequencing projects BeanGenes - beans

Phaseolus and Vigna species

The Brachypodium distachyon Information Resource - model grass

Brachypodium distachyon

Chlamydomonas Center - green alga

Chlamydomonas

ForesttreeDB - white spruce, loblolly pine, and poplar

Picea glauca, Pinus taeda, and Populus species

GrainGenes - grasses

Triticum and Avena species

Gramene - cultivated rice, wild rice, maize, wheat, barley, sorghum, pearl millet, foxtail, and oats

Oryza sativa and Zizania species, Zea mays, Triticum aestivum, Hordeum vulgare, Sorghum bicolor, Pennisetum glaucum, Alopecurus pratensis, Avena species, and other grasses

Legume Base - Lotus japonicus and soybean

Lotus japonicus and Glycine max

The Legume Information Service - multiple legumes

Cicer arietinum, Glycine max, Lotus japonicus, Medicago truncatula, Phaseolus vulgaris, Vigna radiata and other legumes

Maize GDB - corn / maize

Zea mays

Maize Mapping Project - corn / maize

Zea mays

Medicago.org - barrel medic

Medicago truncatula

MIPS (Munich Information Center for Protein Sequence) - mouse ear cress, corn / maize, rice, barrel medic, Lotus japonicus, tomato

Arabidopsis thaliana, Zea mays, Oryza sativa, Medicago truncatula, Lotus japonicus, Solanum lycopersicum

Oryzabase - rice species

Oryza species

Poplar Genome - poplar

Populus trichocarpa

Rice Genome Research Project - cultivated rice

Oryza sativa

SGN (Sol Genomics Network) - tomato, potato, eggplant, pepper, petunia, coffee, petunia

Solanaceae and Rubiaceae species

Systematics and phylogeny of the mustard family Brassicaceae (Cruciferae)

SoyBase - soybean

Glycine max

TIGR Plant Genomics Database - multiple species

UrMeLDB - barrel medic

Medicago truncatula

Wheat Genetic and Genomic Resources Center - wheat and related grasses

Triticum, Aegilops, and Haynaldia villosa species

CyanoBase - Cyanobacteria

Cyanobacteria species

Dictybase - Dictyostelium

Dictyostelium discoideum

FlyBase - fruit fly

Drosophila species

MGI (Mouse Genome Informatics) - mouse

Mus musculus

OMIM (Online Mendelian Inheritance in Man) - human

Homo sapiens

RGD (Rat Genome Database) - rat

Rattus norvegicus

S. pombe Genome Project - fission yeast

Schizosaccharomyces pombe

SGD (Saccharomyces Genome Database) - budding yeast / baker's yeast

Saccharomyces cerevisiae

WormBase - round worms

Caenorhabditis species

ZFIN - zebrafish

Danio rerio

JGI Eukaryotic Genomics Projects - over 40 species

JGI Microbial Genomics Projects - over 200 species

Multiple Species Genome Browser - numerous non-plant species

NCBI Entrez Genome Project Database - hundreds of species

TIGR Genome Projects - multiple species

Worldwide Genetic Resources - over 750 species

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NCBI Entrez Genome Project Database.

Quick Status Summary

Common name	Latin name	Status	Sequencing group	Sequencing method
DICOTS
mouse ear cress	Arabidopsis thaliana	completed	consortium (AGI)	clone
poplar	Populus trichocarpa	completed	JGI	whole genome shotgun
lyreleaf rockcress	Arabidopsis lyrata	in progress	JGI	whole genome shotgun
pink shepherd's purse	Capsella rubella	in progress	JGI	whole genome shotgun
rapeseed	Brassica rapa	in progress	consortium (MGBP)	clone
tomato	Lycopersicum esculentum	in progress	consortium (ITGSP)	clone
potato	Solanum tuberosum	in progress	consortium (PGSC)	clone
barrel medic	Medicago truncatula	completed?	consortium (IMGAG)	clone
	Lotus japonicus	in progress	consortium	clone
monkey flower	Mimulus guttatus	in progress	JGI	whole genome shotgun
soybean	Glycine max	in progress	JGI	whole genome shotgun
cotton	Gossypium hirsutum	in progress	JGI	whole genome shotgun
cassava	Manihot esculenta	in progress	JGI	whole genome shotgun
grape	Vitis vinifera	completed?	consortium	whole genome shotgun
columbine	Aquilegia formosa	pending	JGI	whole genome shotgun
eucalyptus	Eucalyptus grandis	pending	JGI	whole genome shotgun
papaya	Carica papaya	in progress?	consortium	whole genome shotgun
castor bean	Ricinus communis	completed?	TIGR	whole genome shotgun
yellow owl's clover	Triphysaria versicolor	pending	JGI	whole genome shotgun
MONOCOTS
rice	Oryza sativa japonica Nipponbare	completed	consortium (IRGSP)	clone shotgun
rice	Oryza sativa indica	completed	Beijing Genomics Institute	whole genome shotgun
maize	Zea mays	in progress	consortium	clone
sorghum	Sorghum bicolor	completed	JGI	whole genome shotgun
grass	Brachypodium distachyon	in progress	JGI	whole genome shotgun
foxtail millet	Setaria italica	pending	JGI	whole genome shotgun
banana	Musa acuminata	in progress	consortium	clone
wheat	Triticum aestivum	pilot	consortium (IWGSC)	clone or single chromosome shotgun
OTHER
moss	Physcomitrella patens	completed	JGI	whole genome shotgun
gemmiferous spike moss	Selaginella moellendorffii	completed	JGI	whole genome shotgun

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