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专业背景：计算机科学研究方向与兴趣: JavaEE-Web软件开发, 生物信息学, 数据挖掘与机器学习, 智能信息系统目前工作: 基因组, 转录组, NGS高通量数据分析, 生物数据挖掘, 植物系统发育和比较进化基因组学

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代谢、信号、通路与基因调控分析软件

2010-03-28 15:14:45| 分类：生信分析软件 | 标签： |举报 |字号大中小订阅

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CytoScape 分子相互作用

Cytoscape is an open source bioinformatics software platform for visualizing molecular interaction networks and integrating these interactions with gene expression profiles and other state data.

http://cytoscape.org/

pajek

http://vlado.fmf.uni-lj.si/pub/networks/

Ingenuity Pathway Analysis

http://www.ingenuity.com/products/pathways_analysis.html

http://www.bio-soft.net/other/ps.htm

http://www.bio-soft.net/other.html

CFinder is a free software for finding and visualizing overlapping dense groups of nodes in networks, based on the Clique Percolation Method (CPM) of Palla et. al., Nature 435, 814-818 (2005).

http://cfinder.org/

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