云之南

风声，雨声，读书声，声声入耳；家事，国事，天下事，事事关心

日志

关于我

云之南

专业背景：计算机科学研究方向与兴趣: JavaEE-Web软件开发, 生物信息学, 数据挖掘与机器学习, 智能信息系统目前工作: 基因组, 转录组, NGS高通量数据分析, 生物数据挖掘, 植物系统发育和比较进化基因组学

文章分类

Biological Networks

2010-11-22 16:22:18| 分类：计算系统生物学 | 标签： |举报 |字号大中小订阅

下载LOFTER 我的照片书 |

bio-molecular networks:

transcriptional regulatory network (转录调控网, DNA-TF interactions)

gene regulatory networks, (基因调控网, gene-gene interactons)

protein interaction networks, (蛋白交互网, protein-protein interactions)

metabolic networks, (新陈代谢网,enzyme-substrate interactions)

Pathway network (信号通路网, molecule-molecule interactions)

Domain interaction network

Gene co-expression network,

http://www.nd.edu/~networks/BioNetworks/

Journal articles

Trey Ideker, et al, "Integrated Genomic and Proteomic Analyses of a Systemtically Perturbed Metabolic Network", 4 May 2001 Vol 292 Science

Michael T Laub, et al, "Global Analysis of the Genetic Network Controlling a
   Bacterial Cell Cycle", 15 December, 2000 Vol 290, Science
H. Jeong, et al."Lethality and centrality in protein networks",Nature ,Vol 411, 3 MAY 2001
George von Dassow, Eli Meir, "The segment polarity network is a robust developmental module", Nature, Vol 406,13 JULY 2000

H. Jeong, et al, "The large-scale organization of metabolics networks", Nature , v407, 2000
Thomas Simon Shimizu, et al, "Molecular model of a lattice of signalling proteins inVolved in bacterial chemotaxis", Nature Cell Biology, Vol 2, 2000

Michael B. Elowitz, et al, "A synthetic oscillatory network of transcriptional regulators``, Nature , v403, 2000

S. Kalir, et al, "Ordering Genes in a Flagella Pathway by Analysis of Expression Kinetics from Living Bacteria", Science, v292, 2001

Matthew Freeman, "Feedback control of intercellular signalling in development", Nature, v408

Biological Networks 生物网络

一、生物大分子相互作用网络

二、基因表达调控网络

gene expression regulatory network

基因表达调控信息相关数据库

一方面这些数据之间相互关联，蕴含着复杂的基因转录调控规律，为我们研究和分析基
因转录调控提供了很好的基础。另一方面，大规模基因表达数据之中隐藏着基因之间的相互
作用的关系，如果将基因表达数据分析与调控因子对调控元件作用关系分析结合起来，将更
加有利于发现基因调控网络。

三、代谢网络

四、信号传导网络

转录基因子数据库

http://fhqdddddd.blog.163.com/blog/static/18699154201010248357892/

评论这张

转发至微博

阅读(1082)| 评论(0)

历史上的今天

this.p={  m:2,
              b:2,
              loftPermalink:'',
              id:'fks_094066085087082064080095083095085094087074093087083071',
              blogTitle:'Biological Networks',
              blogAbstract:'<p\> <font color=\"#ff0000\"  \><b\><font size=\"3\"  \>bio-molecular networks:</font\></b\></font\><br\></p\><p\>transcriptional regulatory network (转录调控网, DNA-TF interactions)</p\><p\><br\>gene regulatory networks, (基因调控网, gene-gene interactons)</p\><p\><br\></p\><p\>protein interaction networks, (蛋白交互网, protein-protein interactions)</p\><p\><br\>metabolic networks, (新陈代谢网,enzyme-substrate interactions)</p\><p\><br\>Pathway</p\>',
              blogTag:'',
              blogUrl:'blog/static/18699154201010224221860',
              isPublished:1,
              istop:false,
              type:0,
              modifyTime:1314083398792,
              publishTime:1290414138060,
              permalink:'blog/static/18699154201010224221860',
              commentCount:0,
              mainCommentCount:0,
              recommendCount:0,
              bsrk:-100,
              publisherId:0,
              recomBlogHome:false,
              currentRecomBlog:false,
              attachmentsFileIds:[],
              vote:{},
              groupInfo:{},
              friendstatus:'none',
              followstatus:'unFollow',
              pubSucc:'',
              visitorProvince:'',
              visitorCity:'',
              visitorNewUser:false,
              postAddInfo:{},
              mset:'000',
              mcon:'',
              srk:-100,
              remindgoodnightblog:false,
              isBlackVisitor:false,
              isShowYodaoAd:true,
              hostIntro:'专业背景：计算机科学                           \n\n研究方向与兴趣: JavaEE-Web软件开发,\n生物信息学, 数据挖掘与机器学习, 智能信息系统                                                                \n目前工作: 基因组, 转录组, NGS高通量数据分析, 生物数据挖掘, 植物系统发育和比较进化基因组学',
              hmcon:'1',
              selfRecomBlogCount:'0',
              lofter_single:'<iframe width="140" height="560" style="overflow:hidden;" src="http://www.lofter.com/mailEntry.do?blogad=1&blog" frameBorder="0"></iframe>'
            }

{list a as x}
    {if !!x}
    <div class="iblock nbw-fce nbw-f40">
      <a class="fc03 noul" target="_blank" hidefocus="true" href="http://blog.163.com/${x.visitorName}/">
      {if x.visitorName==visitor.userName}
      <img alt="${x.visitorNickname|escape}" onerror="this.src=location.f40" class="cwd bdwa bdc0" src="${fn1(x.visitorName)}&r=${visitor.imageUpdateTime}"/>
      {else}
      <img alt="${x.visitorNickname|escape}" onerror="this.src=location.f40" class="cwd bdwa bdc0" src="${fn1(x.visitorName)}"/>
      {/if}
      </a>
      <div class="cwd vname thide">
        {if x.moveFrom=='wap'}
          <a class="noul pnt" target="_blank" href="http://blog.163.com/services/wapblog.html?frompersonalbloghome"><span title="来自网易手机博客" class="iblock wapIcon"> </span></a>
        {elseif x.moveFrom=='iphone'}
          <a class="noul pnt" target="_blank"><span title="来自iPhone客户端" class="iblock iphoneIcon"> </span></a>
        {elseif x.moveFrom=='android'}
          <a class="noul pnt" target="_blank"><span title="来自Android客户端" class="iblock androidIcon"> </span></a>
        {elseif x.moveFrom=='mobile'}
          <a class="noul pnt" target="_blank" href="http://blog.163.com/services/emsblog.html?frompersonalbloghome"><span title="来自网易短信写博" class="iblock wapIcon"> </span></a>
        {/if}
        <a class="fc03 m2a"  target="_blank" hidefocus="true" href="http://blog.163.com/${x.visitorName}/">
          ${fn(x.visitorNickname,8)|escape}
        </a>
      </div>
    </div>
    {/if}
    {/list}

<#--最新日志，群博日志--> <#--推荐日志-->

<p class="fc06">推荐过这篇日志的人：</p>
    <div>
      {list a as x}
      {if !!x}
      <div class="iblock nbw-fce nbw-f40">
        <a class="fc03 noul" target="_blank" hidefocus="true" href="http://blog.163.com/${x.recommenderName}/">
        <img alt="${x.recommenderNickname|escape}" onerror="this.src=location.f40" class="cwd bdwa bdc0" src="${fn1(x.recommenderName)}"/>
        </a>
        <div class="cwd thide">
          <a class="fc03 m2a" target="_blank" hidefocus="true" href="http://blog.163.com/${x.recommenderName}/">
            ${fn(x.recommenderNickname,6)|escape}
          </a>
        </div>
      </div>
      {/if}
      {/list}
    </div>
    {if !!b&&b.length>0}
    <p  class="fc06">他们还推荐了：</p>
    <ul>
    {list b as y}
      {if !!y}
        <li class="rrb"><span class="iblock">·</span><a class="fc03 m2a" target="_blank" href="http://blog.163.com/${y.recommendBlogPermalink}/?from=blog/static/18699154201010224221860">${y.recommendBlogTitle|escape}</a></li>
      {/if}
    {/list}
    </ul>
    {/if}

<#--引用记录--> <#--博主推荐--> <#--随机阅读--> <#--首页推荐--> <#--历史上的今天--> <#--被推荐日志--> <#--上一篇，下一篇--> <#-- 热度 -->

{list a as x}
    {if !!x}
    <div class="hotItem iblock nbw-fce nbw-f40">
      <a class="fc03 noul" target="_blank" hidefocus="true" href="http://blog.163.com/${x.publisherUsername}/">
      {if x.publisherUsername==visitor.userName}
      <img alt="${x.publisherNickname|escape}" onerror="this.src=location.f40" class="cwd bdwa bdc0" src="${fn1(x.publisherUsername)}&r=${visitor.imageUpdateTime}"/>
      {else}
      <img alt="${x.publisherNickname|escape}" onerror="this.src=location.f40" class="cwd bdwa bdc0" src="${fn1(x.publisherUsername)}"/>
      {/if}
      </a>
      <div class="cwd vname thide">
        <a class="fc03 m2a"  target="_blank" hidefocus="true" href="http://blog.163.com/${x.publisherUsername}/">
          ${fn(x.publisherNickname,8)|escape}
        </a>
      </div>
      <a class="f-myLikeIcons hottype {if x.type==1} js-liketype{elseif x.type==2} js-reblogtype{elseif x.type==3} js-sharetype{else}{/if}" target="_blank" hidefocus="true" href="http://blog.163.com/${x.publisherUsername}/"> </a>
    </div>
    {/if}
    {/list}

<#-- 网易新闻广告 --> <#--右边模块结构--> <#--评论模块结构--> <#--引用模块结构--> <#--博主发起的投票-->

页脚

我的照片书 - 手机博客 - 下载LOFTER APP - 订阅此博客

云之南

导航

日志

Biological Networks

历史上的今天

最近读者

热度

评论

页脚