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专业背景：计算机科学研究方向与兴趣: JavaEE-Web软件开发, 生物信息学, 数据挖掘与机器学习, 智能信息系统目前工作: 基因组, 转录组, NGS高通量数据分析, 生物数据挖掘, 植物系统发育和比较进化基因组学

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miRNA DATABASE

2010-01-09 10:52:05| 分类：生信数据库 | 标签： |举报 |字号大中小订阅

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http://www.ncrna.org/KnowledgeBase/link-database/mirna_target_database

ncRNA KnowledgeBase → Databases → miRNA Target Database

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miRNA Target Database

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miRanda — 作者：admin — 上次修改时间: 2006-10-27 22:25: miRNA target prediction for human, drosophila and zebrafish genomes by using miRanda.
miRBase — 作者：admin — 上次修改时间: 2007-08-17 00:43: Fromer "microRNA Registry", which is a comprehensive repository for miRNAs and their predicted targets. The target prediction is performed by using miRanda software.
miRNAMap — 作者：admin — 上次修改时间: 2006-10-27 22:25: miRNAMap is a genomic maps of microRNA genes and their target genes in mammalian genomes. The target prediction is performed with miRanda.
TarBase — 作者：admin — 上次修改时间: 2006-10-27 22:25: TarBase is a comprehensive database of experimentally supported animal microRNA targets.
microInspector — 作者：admin — 上次修改时间: 2006-10-27 22:25: A web server for microInspector that detects miRNA binding sites. No prediction results available.
PicTar — 作者：admin — 上次修改时间: 2006-10-27 22:25: Micro RNA targets for vertebrates, fly and nematodes are available (no batch download). PicTar on-line service is available. Software is not available for download.
TargetScanS — 作者：admin — 上次修改时间: 2006-10-27 22:25: TargetScanS is a software for microRNA targets. Prediction results for human genome are available. No batch download and no software download.
RNAhybrid — 作者：admin — 上次修改时间: 2006-10-27 22:25: Program source code is available. Web service is available. Perl modules and Java Beans are available. No prediction results available.
miRNA - Target Gene Prediction at EMBL — 作者：admin — 上次修改时间: 2006-10-27 22:25: This website provides access to our 2003 and 2005 miRNA-Target predictions for Drosophila miRNAs with their original experimental method.
DIANA MicroTest — 作者：admin — 上次修改时间: 2006-10-27 22:25: Micro RNA target prediction software provided as a web service. Query (miRNA) and Subject (genes) sequences are required to be input. No software download. No prediction results available.

http://bioinformatics.cau.edu.cn/PMRD/
http://www.mirbase.org/
http://www.ncrna.org/KnowledgeBase/link-database/mirna_target_database
http://www.ncrna.org/
http://www.microrna.org
http://www.mir2disease.org/

miRNA 预测软件: miREAP http://sourceforge.net/projects/mireap/
miRDEEP http://www.mdc-berlin.de/en/research/research_teams/systems_biology_of_gene_regulatory_elements/projects/miRDeep/index.html
miRAN-Target预测:: plant :http://bioinfo3.noble.org/psRNATarget/; plant:http://wmd3.weigelworld.org/cgi-bin/webapp.cgi?page=Home;project=stdwm; HOCTARdb human microRNA target prediction http://hoctar.tigem.it/

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