云之南

风声，雨声，读书声，声声入耳；家事，国事，天下事，事事关心

日志

关于我

云之南

专业背景：计算机科学研究方向与兴趣: JavaEE-Web软件开发, 生物信息学, 数据挖掘与机器学习, 智能信息系统目前工作: 基因组, 转录组, NGS高通量数据分析, 生物数据挖掘, 植物系统发育和比较进化基因组学

文章分类

CSC-IT Center for Science

2010-01-07 14:01:36| 分类：生信分析软件 | 标签： |举报 |字号大中小订阅

下载LOFTER 我的照片书 |

http://www.csc.fi/english/research/sciences/bioscience/programs

Extranet Contact us Feedback Sitemap Search

Suomeksi Kort p? svenska

Hypp?? sis?lt??n. Hypp?? navigointiin

CSC

Osiot

Aliosiot

Sciences and methods > Biosciences > Programs


Sis?lt? Biosciences Programs Databases Courses and events Books and magazines Research and Development Networks Chemistry Computational Fluid Dynamics Earth science Electromagnetics Language research Mathematical modelling Nanoscience Numerical methods Physics Parallel computing Program development Statistics Structural analysis	Tehdyt toimenpiteet Bioinformatics Tools Programs marked with W can be used with a web browser. General sequence analysis packages EMBOSS Programs for analysing DNA and amino acid sequence data. W DNA microarray data analysis Chipster Easy-to-use graphical software for DNA microarray data analysis based on R/Bioconductor R / Bioconductor A statistical environment with support for genomics Sequence assembly MIRA Whole Genome Shotgun and EST Sequence Assembler Velvet assembler for very short reads SAMtools utilities for manging SAM/BAM formatted alignmnet files Promoter analysis GenomatixSuitePE Databases and tools for promoter and pathway analysis. W Database searching and sequence alignment BLAST Sequence database homology search tool. W Exonerate Generic sequence alignment tool W HMMER Sequence database search based on profile-HMM. PairsDB A tool to retrieve pre-calculated BLAST and PSI-BLAST results form the PairsDB database. W SSAHA2 Fast hash function based search tool for DNA sequences Wise2 (GeneWise) comparing protein sequences and HMMs to nucleotide sequences Multiple sequence alignment CD-HIT Sequence clustering and redundancy removal ClustalW Multiple sequence alignment W Muscle A fast and accurate multiple sequence alignment program W MAFFT Multiple sequece alignment program W Seaview A multiple sequence alignment editor JalView A multiple sequence alignment editor Pathway analysis Ingenuity Pathways Analysis W GenomatixSuitePE Databases and tools for promoter and pathway analysis. W Phylogenetics MrBayes Program for inferring phylogenies using bayesian methods PHYLIP Package for inferring phylogenies W POY Program for inferring phylogenies RAxML Fast program for inferring phylogenies with likelihood TNT A fast program for inferring phylogenies with parsimony methods Structural Biology Discovery Studio Molecular modeling package D Maestro Molecular modeling package RasMol Molecular graphics visualisation Rosetta Protein structure prediction and protien docking tool VMD Molecular graphics visualisation RNA secundary structure prediction Vienna Package (within EMBOSS) Gene mapping MERLIN A fast program for nonparametric linkage, and haplotyping LINKAGE / FASTLINK Parametric linkage analysis GENEHUNTER Multi-point linkage calculations for small pedigrees SNPHAP Population-based SNP haplotype reconstruction SimWalk2 Haplotyping, and non-parametric analysis DHSMAP Fine-mapping of qualitative traits by linkage disequilibrium SLINK Power simulation tool for linkage studies based PedCheck Detects marker typing incompatibilities in pedigree data Mega2 Converts Linkage-format files to other formats Pseudomarker Joint linkage and LD analysis Systems biology bestim Gene regulatory network inference under the Boolean network model. decomptool Decomposition of biochemical networks into subnetworks FBAtool A program for flux balance analysis of metabolic networks SOSlib Program for running simulations for SBML formatted models. Other tools Bioperl Bioinformatics tools for perl programming Jnet Protein secondary structure prediction program Primer PCR primer design TMHMM Transmembrane helix prediction tool

CSC — IT Center for Science Ltd. About the site ? CSC

评论这张

转发至微博

阅读(997)| 评论(0)

历史上的今天

this.p={  m:2,
              b:2,
              loftPermalink:'',
              id:'fks_083069085084083064084084083095085094087074093087083071',
              blogTitle:'CSC-IT Center for Science',
              blogAbstract:'http://www.csc.fi/english/research/sciences/bioscience/programs<br\><br\><br\>      <div\>        <div\>                <div\>          <img title=\"CSC-IT Center for Science - fhqdddddd - 流浪云南\"   src=\"http://www.csc.fi/top-navigation-left.gif\"   alt=\"rounded-corner\"   \>                    <a rel=\"nofollow\" href=\"http://www.csc.fi/english/extra/net\"   \>Extranet</a\>          <a rel=\"nofollow\" href=\"http://www.csc.fi/english/contacts\"   \>Contact us</a\>          <a rel=\"nofollow\" href=\"http://www.csc.fi/english/info/feedback\"   \>Feedback</a\>          <a rel=\"nofollow\" href=\"http://www.csc.fi/english/info/sitemap\"   \>Sitemap</a\>          <a rel=\"nofollow\" href=\"http://www.csc.fi/english/info/search_form\"   \>Search</a\>                                          <div\>                                                        </div\></div\></div\></div\>',
              blogTag:'',
              blogUrl:'blog/static/186991542010072136658',
              isPublished:1,
              istop:false,
              type:0,
              modifyTime:1381891603491,
              publishTime:1262844096658,
              permalink:'blog/static/186991542010072136658',
              commentCount:0,
              mainCommentCount:0,
              recommendCount:0,
              bsrk:-100,
              publisherId:0,
              recomBlogHome:false,
              currentRecomBlog:false,
              attachmentsFileIds:[],
              vote:{},
              groupInfo:{},
              friendstatus:'none',
              followstatus:'unFollow',
              pubSucc:'',
              visitorProvince:'',
              visitorCity:'',
              visitorNewUser:false,
              postAddInfo:{},
              mset:'000',
              mcon:'',
              srk:-100,
              remindgoodnightblog:false,
              isBlackVisitor:false,
              isShowYodaoAd:true,
              hostIntro:'专业背景：计算机科学                           \n\n研究方向与兴趣: JavaEE-Web软件开发,\n生物信息学, 数据挖掘与机器学习, 智能信息系统                                                                \n目前工作: 基因组, 转录组, NGS高通量数据分析, 生物数据挖掘, 植物系统发育和比较进化基因组学',
              hmcon:'1',
              selfRecomBlogCount:'0',
              lofter_single:'<iframe width="140" height="560" style="overflow:hidden;" src="http://www.lofter.com/mailEntry.do?blogad=1&blog" frameBorder="0"></iframe>'
            }

{list a as x}
    {if !!x}
    <div class="iblock nbw-fce nbw-f40">
      <a class="fc03 noul" target="_blank" hidefocus="true" href="http://blog.163.com/${x.visitorName}/">
      {if x.visitorName==visitor.userName}
      <img alt="${x.visitorNickname|escape}" onerror="this.src=location.f40" class="cwd bdwa bdc0" src="${fn1(x.visitorName)}&r=${visitor.imageUpdateTime}"/>
      {else}
      <img alt="${x.visitorNickname|escape}" onerror="this.src=location.f40" class="cwd bdwa bdc0" src="${fn1(x.visitorName)}"/>
      {/if}
      </a>
      <div class="cwd vname thide">
        {if x.moveFrom=='wap'}
          <a class="noul pnt" target="_blank" href="http://blog.163.com/services/wapblog.html?frompersonalbloghome"><span title="来自网易手机博客" class="iblock wapIcon"> </span></a>
        {elseif x.moveFrom=='iphone'}
          <a class="noul pnt" target="_blank"><span title="来自iPhone客户端" class="iblock iphoneIcon"> </span></a>
        {elseif x.moveFrom=='android'}
          <a class="noul pnt" target="_blank"><span title="来自Android客户端" class="iblock androidIcon"> </span></a>
        {elseif x.moveFrom=='mobile'}
          <a class="noul pnt" target="_blank" href="http://blog.163.com/services/emsblog.html?frompersonalbloghome"><span title="来自网易短信写博" class="iblock wapIcon"> </span></a>
        {/if}
        <a class="fc03 m2a"  target="_blank" hidefocus="true" href="http://blog.163.com/${x.visitorName}/">
          ${fn(x.visitorNickname,8)|escape}
        </a>
      </div>
    </div>
    {/if}
    {/list}

<#--最新日志，群博日志--> <#--推荐日志-->

<p class="fc06">推荐过这篇日志的人：</p>
    <div>
      {list a as x}
      {if !!x}
      <div class="iblock nbw-fce nbw-f40">
        <a class="fc03 noul" target="_blank" hidefocus="true" href="http://blog.163.com/${x.recommenderName}/">
        <img alt="${x.recommenderNickname|escape}" onerror="this.src=location.f40" class="cwd bdwa bdc0" src="${fn1(x.recommenderName)}"/>
        </a>
        <div class="cwd thide">
          <a class="fc03 m2a" target="_blank" hidefocus="true" href="http://blog.163.com/${x.recommenderName}/">
            ${fn(x.recommenderNickname,6)|escape}
          </a>
        </div>
      </div>
      {/if}
      {/list}
    </div>
    {if !!b&&b.length>0}
    <p  class="fc06">他们还推荐了：</p>
    <ul>
    {list b as y}
      {if !!y}
        <li class="rrb"><span class="iblock">·</span><a class="fc03 m2a" target="_blank" href="http://blog.163.com/${y.recommendBlogPermalink}/?from=blog/static/186991542010072136658">${y.recommendBlogTitle|escape}</a></li>
      {/if}
    {/list}
    </ul>
    {/if}

<#--引用记录--> <#--博主推荐--> <#--随机阅读--> <#--首页推荐--> <#--历史上的今天--> <#--被推荐日志--> <#--上一篇，下一篇--> <#-- 热度 -->

{list a as x}
    {if !!x}
    <div class="hotItem iblock nbw-fce nbw-f40">
      <a class="fc03 noul" target="_blank" hidefocus="true" href="http://blog.163.com/${x.publisherUsername}/">
      {if x.publisherUsername==visitor.userName}
      <img alt="${x.publisherNickname|escape}" onerror="this.src=location.f40" class="cwd bdwa bdc0" src="${fn1(x.publisherUsername)}&r=${visitor.imageUpdateTime}"/>
      {else}
      <img alt="${x.publisherNickname|escape}" onerror="this.src=location.f40" class="cwd bdwa bdc0" src="${fn1(x.publisherUsername)}"/>
      {/if}
      </a>
      <div class="cwd vname thide">
        <a class="fc03 m2a"  target="_blank" hidefocus="true" href="http://blog.163.com/${x.publisherUsername}/">
          ${fn(x.publisherNickname,8)|escape}
        </a>
      </div>
      <a class="f-myLikeIcons hottype {if x.type==1} js-liketype{elseif x.type==2} js-reblogtype{elseif x.type==3} js-sharetype{else}{/if}" target="_blank" hidefocus="true" href="http://blog.163.com/${x.publisherUsername}/"> </a>
    </div>
    {/if}
    {/list}

<#-- 网易新闻广告 --> <#--右边模块结构--> <#--评论模块结构--> <#--引用模块结构--> <#--博主发起的投票-->

页脚

我的照片书 - 手机博客 - 下载LOFTER APP - 订阅此博客

云之南

导航

日志

CSC-IT Center for Science

CSC

Osiot

Aliosiot

Tehdyt toimenpiteet

Bioinformatics Tools

General sequence analysis packages

DNA microarray data analysis

Sequence assembly

Promoter analysis

Database searching and sequence alignment

Multiple sequence alignment

Pathway analysis

Phylogenetics

Structural Biology

RNA secundary structure prediction

Gene mapping

Systems biology

Other tools

历史上的今天

最近读者

热度

评论

页脚