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云之南

风声,雨声,读书声,声声入耳;家事,国事,天下事,事事关心

 
 
 

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专业背景:计算机科学 研究方向与兴趣: JavaEE-Web软件开发, 生物信息学, 数据挖掘与机器学习, 智能信息系统 目前工作: 基因组, 转录组, NGS高通量数据分析, 生物数据挖掘, 植物系统发育和比较进化基因组学

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2010-01-05 19:32:02|  分类: 生信分析软件 |  标签: |举报 |字号 订阅

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可以找MPIBlast,MPIHmmer,等并行程序

Blast

RiceBlastDB at Cornell or at the UK CropNet mirror site

http://ukcrop.net/cgi-bin/webace?db=RiceBlastDB

Blast Search in CSHL- Search your sequence for similarity against our database of rice genomic sequence

http://www.cshl.org/genbin/cgi-bin/riceblast.cgi

Blast Searches - NCBI's sequence similarity search tool designed to support analysis of nucleotide and protein databases

http://www.ncbi.nlm.nih.gov/BLAST/

Rice Blast Search in TIGR - Oryza sativa Repeat Database Search

http://www.tigr.org/tdb/rice/blastsearch.html

EST Searches

Plant ESTs search, University of Minnesota

http://www.cbc.umn.edu/cgi-bin/blasts/public_blasts/blastn.cgi

ESTs similarity search, University of Minnesota

http://www.cbc.umn.edu/ResearchProjects/Search/index.html

Search ESTs from Genbank, NCBI

http://www.ncbi.nlm.nih.gov/dbEST/index.html

Sequence Analysis

DataBase Search - USDA-ARS Center for Bioinformatics and Comparative Genomics

http://ars-genome.cornell.edu/search.html

TAIR Restriction Analysis

http://www.arabidopsis.org/cgi-bin/patmatch/RestrictionMapper.pl

Gene Identification

http://ccr-081.mit.edu/GENSCAN.html

http://sciclio.cshl.org/genefinder/

http://compbio.ornl.gov/tools/index.shtml

http://dot.imgen.bcm.tmc.edu:9331/gene-finder/gf.html

Find similarities among multiple sequences

http://www.ch.embnet.org/software/BOX_form.html

http://www.blocks.fhcrc.org/blockmkr/make_blocks.html

Identification of nucleotide and peptide motifs

http://dna.stanford.edu/identify/

http://dna.stanford.edu/emotif/

Prediction of structural domains

http://www.biochem.ucl.ac.uk/bsm/cath/

http://www2.ebi.ac.uk/dali/

DataBase Search - USDA-ARS Center for Bioinformatics and Comparative Genomics

http://ars-genome.cornell.edu/search.html

Others

Molecular biology-related search and analysis services

http://stein.cshl.org/talks/BioWWW/handout.html

http://dot.imgen.bcm.tmc.edu:9331/

Integrated rice genome Explorer - a database integrating the genetic map, physical map and sequencing information of rice genome

http://www.staff.or.jp/giot/INE.html

Sequencing Collaboration in RGP (JP)

http://www.staff.or.jp/Seqcollab.html

Codon usage analysis

http://www.kazusa.or.jp/codon

 

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