http://www.illumina.com/software/genome_analyzer_software.ilmn#third_party_tools
Third-Party Da
The evolution of next-generation sequencing technology will continue to require collaboration among researchers, thought leaders, and industry. Illumina encourages the open exchange of information and ideas, and we are committed to rapidly delivering solutions that will maximize your scientific success.
Below you will find tools developed by Illumina sequencing customers that you can use to analyze your Genome Analyzer da
Genome Alignment Browsers
Anno-J – Genome Annotation and Visualization Computational Systems Biology Center of Excellence
http://www.annoj.org
Alignment and Polymorphism Detection
Genomic Assembly
http://bioinformatics.oxfordjournals.org/cgi/content/full/23/4/500
Consed – Alignement and Polymorphism Detection Green Lab, U. Washington (commercial offering)
http://bozeman.mbt.washington.edu/consed/consed.html
SOAP – Short Oligonucleotide Alignment Program
Ruiqiang Li, Beijing Genomics Institute
http://soap.genomics.org.cn/
ChIP Sequencing
CisGenome http://www.biostat.jhsph.edu/~hji/cisgenome/
Digital Gene Exprhttp://cgap.nci.nih.gov/SAGE/SDGED_Wizard?METHOD=SS10,LS10&ORG=Hs
补充:
peak SOFTWARE
CisGenome http://www.biostat.jhsph.edu/~hji/cisgenome/
FindPeaks http://www.bcgsc.ca/platform/bioinfo/software/findpeaks
SISSRS http://www.rajajothi.com/sissrs/
MACS http://liulab.dfci.harvard.edu/MACS/
QuEST http://mendel.stanford.edu/sidowlab/downloads/quest/
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