注册 登录  
 加关注
   显示下一条  |  关闭
温馨提示!由于新浪微博认证机制调整,您的新浪微博帐号绑定已过期,请重新绑定!立即重新绑定新浪微博》  |  关闭

云之南

风声,雨声,读书声,声声入耳;家事,国事,天下事,事事关心

 
 
 

日志

 
 
关于我

专业背景:计算机科学 研究方向与兴趣: JavaEE-Web软件开发, 生物信息学, 数据挖掘与机器学习, 智能信息系统 目前工作: 基因组, 转录组, NGS高通量数据分析, 生物数据挖掘, 植物系统发育和比较进化基因组学

网易考拉推荐

Oxford Journals Life Sciences Bioinformatics Next Generation Sequencing  

2010-01-01 12:45:37|  分类: 生物信息学 |  标签: |举报 |字号 订阅

  下载LOFTER 我的照片书  |

http://www.oxfordjournals.org/our_journals/bioinformatics/nextgenerationsequencing.html

 

 

  • Oxford Journals
  • Life Sciences
  • Bioinformatics
  • Next Generation Sequencing
  • Oxford Journals  Life Sciences Bioinformatics  Next Generation Sequencing - fhqdddddd - 流浪云南

    Next Generation Sequencing

    Next-generation sequencing technologies are revolutionising genomics and their effects are becoming increasingly widespread. Many tools and algorithms relevant to next-generation sequencing applications have been published in Bioinformatics, and so to celebrate this contribution we have gathered these together in this 'Bioinformatics for Next Generation Sequencing' virtual issue. This will be a living resource that we will continually update to include the very latest papers in this area to help researchers keep abreast of the latest developments.

    Editorial -Bioinformatics for Next Generation Sequencing

    Alex Bateman and John Quackenbush

    Bioinformatics (2009) 25: 429 Full Text

    A Report on the 2009 SIG on Short Read Sequencing and Algorithms (Short-SIG)

    Michael Brudno et al.

    Bioinformatics (2009) 25: 2863–2864 Full Text

    Alignment

    Optimal spliced alignments of short sequence reads

    Fabio De Bona et al.

    Bioinformatics (2008) 24: i174-80 Full Text

    PatMaN: rapid alignment of short sequences to large databases

    Kay Prüfer et al.

    Bioinformatics (2008) 24: 1530-1 Full Text

    SeqMap: mapping massive amount of oligonucleotides to the genome

    Hui Jiang and Wing Wong

    Bioinformatics (2008) 24: 2395-6 Full Text

    ZOOM! Zillions of oligos mapped

    Hao Lin et al.

    Bioinformatics (2008) 24: 2431-7 Full Text

    Efficient mapping of Applied Biosystems SOLiD sequence data to a reference genome for functional genomic applications

    Brian Ondov et al.

    Bioinformatics (2008) 24: 2776-7 Full Text

    Slider - Maximum use of probability information for alignment of short sequence reads and SNP detection

    Nawar Malhis et al.

    Bioinformatics (2009) 25: 6-13 Full Text

    SOAP: short oligonucleotide alignment

    Ruiqiang Li et al.

    Bioinformatics (2008) 24: 713-4 Full Text

    Annotation of metagenome short reads using Proxygenes

    Daniel Dalevi et al.

    Bioinformatics (2008) 24: i7-13 Full Text

    Optimal pooling for genome re-sequencing with ultra-high-throughput short-read technologies

    Iman Hajirasouliha

    Bioinformatics (2008) 24: i32-40 Full Text

    PASS: a Program to Align Short Sequences

    Davide Campagna et al.

    Bioinformatics (2009) 25: 967–968 Full Text

    MOM: Maximum Oligonucleotide Mapping

    Hugh Eaves and Yuan Gao

    Bioinformatics (2009) 25: 969–970 Full Text

    ProbeMatch: Rapid alignment of oligonucleotides to a genome allowing both gaps and mismatches

    Jignesh Patel et al.

    Advanced Access publication: 7 April 2009 Full Text

    Fast and Accurate Short Read Alignment with Burrows-Wheeler Transform

    Li Heng and Richard Durbin

    Advanced Access publication: 18 May 2009 Full Text

    CloudBurst: highly sensitive read mapping with MapReduce

    Michael Schatz

    Bioinformatics (2009) 25: 1363–1369 Full Text

    SOAP2: an improved ultrafast tool for short read alignment

    Ruiqiang Li

    Advanced Access publication: 3 June 2009 Full Text

    A Fast Hybrid Short Read Fragment Assembly Algorithm

    Bertil Schmidt et al.

    Advanced Access publication: 17 June 2009 Full Text

    SNP-o-matic

    Heinrich Manske and Dominic Kwiatkowski

    Advanced Access publication: 2 July 2009 Full Text

    VarScan: Variant detection in massively parallel

    Daniel Koboldt

    Advanced Access publication: 19 June 2009 Full Text

    PerM: Efficient Mapping of Short Sequencing Reads with Periodic Full Sensitive Spaced Seeds

    Yangho Chen et al

    Advanced Access publication: 12 August 2009 Full Text

    Effect of read-mapping biases on detecting allele-specific expression from RNA-sequencing data

    Jacob Degner et al.

    Advanced Access publication: 6 October 2009 Full Text

    Updates to the RMAP short-read mapping software

    Andrew Smith et al.

    Bioinformatics (2009) 25: 2841–2842 Full Text

    Probabilistic resolution of multi-mapping reads in massively parallel sequencing data using MuMRescueLite

    Takehiro Hashimoto et al.

    Bioinformatics (2009) 25: 2613-4 Full Text

    Assembly

    Aggressive Assembly of Pyrosequencing Reads with Mates

    Jason Miller et al.

    Bioinformatics (2008) 24: 2818-24 Full Text

    Assembly reconciliation

    Aleskey Zimin et al.

    Bioinformatics (2008) 24: 42-5 Full Text

    Consensus Generation and Variant Detection by Celera Assembler

    Gennady Denisov et al.

    Bioinformatics (2008) 24: 1035-40 Full Text

    Assembling millions of short DNA sequences using SSAKE

    Rene Warren et al.

    Bioinformatics (2007) 23: 500-1 Full Text

    Extending assembly of short DNA sequences to handle error

    William Jeck et al.

    Bioinformatics (2007) 23: 2942-4 Full Text

    SCARF: Maximizing next-generation EST assemblies for evolutionary and population genomic analyses

    Michael Barker et al.

    Bioinformatics (2009) 25: 535-536 Full Text

    Profiling model T-cell metagenomes with short reads

    René Warren et al

    Bioinformatics (2008) 25: 458-64 Full Text

    A Consistency-based Consensus Algorithm for De Novo and Reference-guided Sequence Assembly of Short Reads.

    Tobias Rausch et al.

    Bioinformatics (2009) 25: 1118–1124 Full Text

    HI: Haplotype Improver using paired-end short

    Quan Long et al.

    Advanced Access publication: 1 July 2009 Full Text

    Pindel: a pattern growth approach to detect break points of large deletions and medium sized insertions from paired-end short reads

    Kai Ye et al.

    Advanced Access publication: 26 June 2009 Full Text

    Increasing the coverage of a metapopulation consensus genome by iterative read mapping and assembly

    Bas Dutilh et al.

    Advanced Access publication: 19 June 2009 Full Text

    De novo Transcriptome Assembly with ABySS

    Inanc Birol et al.

    Advanced Access publication: 15 June 2009 Full Text

    Detecting SNPs and estimating allele frequencies in clonal bacterial populations by sequencing pooled DNA

    Kathryn Holt et al.

    Bioinformatics (2009) 25: 2074-5 Full Text

    Base Calling

    SHREC: A short-read error correction method

    Bertil Schmidt et al.

    Advanced Access publication: 19 June 2009 Full Text

    Swift: Primary Data Analysis for the Illumina

    Nava Whiteford et al.

    Advanced Access publication: 23 June 2009 Full Text

    TagDust - A program to eliminate artifacts from next generation sequencing data

    Timo Lassmann et al.

    Bioinformatics (2009) 25: 2839–2840 Full Text

    CDS Prediction

    FrameDP: sensitive peptide detection on noisy matured sequences

    Jér?me Gouzy, Sébastien Carrere and Thomas Schiex

    Bioinformatics 25: 670–671 Full Text

    CHIP-seq

    FindPeaks 3.1: A Tool for Identifying Areas of Enrichment from Massively Parallel Short-Read Sequencing Technology

    Anthony Fejes et al.

    Bioinformatics (2008) 24: 1729-30 Full Text

    F-Seq: A Feature Density Estimator for High-Throughput Sequence Tags

    Alan Boyle et al.

    Bioinformatics (2008) 24: 2537-8 Full Text

    Hierarchical Hidden Markov Model with Application to Joint Analysis of ChIP-chip and ChIP-seq data

    Hyungwon Choi et al.

    Advanced Access publication: 14 May 2009 Ful text

    A clustering approach for identification of enriched domains from histone modification ChIP-Seq data

    Weiqun Peng et al.

    Advanced Access publication: 8 June 2009 Full Text

    Diagnosis

    Statistical Model for Whole Genome Sequencing and Its Application to Minimally Invasive Diagnosis of Fetal Genetic Disease

    Tianjiao Chu et al.

    Bioinformatics (2009) 25: 1244–1250 Full Text

    ISOLATE: A computational strategy for identifying the primary origin of cancers using high throughput sequencing

    Gerald Quon and Quaid Morris

    Advanced Access publication: 19 June 2009 Full Text

    Mapping

    The Sequence Alignment/Map (SAM) Format and SAMtools

    Heng Li et al.

    Advanced Access publication: 8 June 2009 Full Text

    Probabilistic resolution of multi-mapping reads in massively parallel sequencing data using MuMRescueLite

    Geoffrey Faulkner et al.

    Advanced Access publication: 15 July 2009 Full Text

    Pipeline

    PIQA: Pipeline for Illumina G1 Genome Analyzer Data Quality Assessment

    Antonio Martinez-Alcantara et al.

    Advanced Access publication: 14 July 2009 Full Text

    ShortRead: A Bioconductor package for input, quality assessment, and exploration of high throughput sequence data

    Martin Morgan et al.

    Advanced Access publication: 3 August 2009 Full Text

    RNA-Seq

    Statistical Inferences for Isoform Expression in RNA-Seq.

    Hui Jiang and Wing Wong

    Bioinformatics (2009) 25: 1026–1032 Full Text

    A toolkit for analysing large-scale plant small RNA datasets

    Simon Moxon et al.

    Bioinformatics (2008) 24: 2252-2253 Full Text

    TopHat: discovering splice junctions with RNA-Seq

    Cole Trapnell et al.

    Bioinformatics (2009) 25: 1105–1111 Full Text

    RNA-MATE: A recursive mapping strategy for high-throughput RNA-sequencing data

    Nicole Cloonan et al.

    Bioinformatics (2009) 25: 2615-6 Full Text

    Oxford Journals  Life Sciences Bioinformatics  Next Generation Sequencing - fhqdddddd - 流浪云南

      评论这张
     
    阅读(622)| 评论(0)
    推荐 转载

    历史上的今天

    在LOFTER的更多文章

    评论

    <#--最新日志,群博日志--> <#--推荐日志--> <#--引用记录--> <#--博主推荐--> <#--随机阅读--> <#--首页推荐--> <#--历史上的今天--> <#--被推荐日志--> <#--上一篇,下一篇--> <#-- 热度 --> <#-- 网易新闻广告 --> <#--右边模块结构--> <#--评论模块结构--> <#--引用模块结构--> <#--博主发起的投票-->
     
     
     
     
     
     
     
     
     
     
     
     
     
     

    页脚

    网易公司版权所有 ©1997-2016